Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
grdB_1Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; KEGG: chy:CHY_2393 2.3e-84 grdB; glycine reductase, selenoprotein B; COG: NOG11573 non supervised orthologous group. (351 aa)    
Predicted Functional Partners:
EDS08460.1
KEGG: chy:CHY_2393 6.8e-30 grdB; glycine reductase, selenoprotein B; COG: NOG06475 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
     0.973
GrdE_1
Putative betaine reductase complex component B subunit alpha; KEGG: tte:TTE1879 3.2e-64 GrdE proprotein; COG: NOG06476 non supervised orthologous group.
 
   
 0.938
EDS07143.1
KEGG: chy:CHY_2393 4.0e-13 grdB; glycine reductase, selenoprotein B; COG: NOG11573 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.928
grdA1
Putative glycine/sarcosine/betaine reductase complex component A1; KEGG: tde:TDE0745 6.4e-34 grdA; glycine reductase complex selenoprotein GrdA; COG: NOG11771 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.838
EDS08463.1
Hypothetical protein; COG: NOG19648 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.811
grdC
Glycine reductase complex component C, beta subunit; KEGG: tte:TTE1875 6.0e-157 fabH4; 3-oxoacyl-(acyl-carrier-protein) synthase III; COG: NOG06474 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.810
grdE
Glycine reductase, subunit ABC; KEGG: tte:TTE1879 8.8e-156 GrdE proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.809
plsX-2
Fatty acid/phospholipid synthesis protein PlsX; KEGG: tde:TDE0239 3.6e-104 grdD; glycine reductase complex protein GrdD; COG: COG0416 Fatty acid/phospholipid biosynthesis enzyme; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.808
grdA
Glycine/sarcosine/betaine reductase complex component A; KEGG: chy:CHY_2392 1.6e-14 grdA; glycine reductase, selenoprotein A; COG: NOG11771 non supervised orthologous group.
 
     0.791
betB
Aldehyde dehydrogenase (NAD) family protein; KEGG: tde:TDE0080 1.3e-175 gbsA; betaine aldehyde dehydrogenase K00130; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
       0.727
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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