Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
sorCKEGG: ret:RHE_PA00021 6.4e-34 putative transcriptional regulator protein, AsnC/GntR family K00863; COG: COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; Psort location: Cytoplasmic, score: 8.87. (317 aa)    
Predicted Functional Partners:
dhaK
DAK1 domain protein; KEGG: ypm:YP_0337 4.8e-116 dAK1_1; putative dihydroxyacetone kinase K05878; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
     0.800
lsrF
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; KEGG: mja:MJ0400 5.5e-44 putative aldolase K01726; COG: COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.704
YhdG_2
Amino acid permease; KEGG: eci:UTI89_C0120 1.0e-18 aroP; aromatic amino acid transport protein AroP K03293; COG: COG0531 Amino acid transporters; Psort location: CytoplasmicMembrane, score: 10.00.
       0.598
yjmD
Putative chlorophyll synthesis pathway protein BchC; KEGG: tde:TDE0075 1.0e-76 sorbitol dehydrogenase, putative K00008; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
 
     0.583
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: chu:CHU_2987 1.5e-96 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134; COG: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.509
gap-2
KEGG: fth:FTH_1121 1.5e-121 gapA; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; COG: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.509
lsrB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.446
betB
Aldehyde dehydrogenase (NAD) family protein; KEGG: tde:TDE0080 1.3e-175 gbsA; betaine aldehyde dehydrogenase K00130; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
     
 0.439
dhaL
Dihydroxyacetone kinase, L subunit; KEGG: sme:SMb20313 1.2e-55 putative dihydroxyacetone kinase protein K05879; COG: COG2376 Dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
     0.411
grdB_1
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; KEGG: chy:CHY_2393 2.3e-84 grdB; glycine reductase, selenoprotein B; COG: NOG11573 non supervised orthologous group.
       0.401
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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