Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS07164.1Hypothetical protein; COG: COG3547 Transposase and inactivated derivatives. (112 aa)    
Predicted Functional Partners:
EDS07165.1
Hypothetical protein.
       0.634
EDS07166.1
Hypothetical protein.
       0.438
EDS07167.1
Hypothetical protein.
       0.438
EDS07240.1
DNA-binding helix-turn-helix protein; COG: COG4636 Uncharacterized protein conserved in cyanobacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.427
EDS06239.1
Putative transposase; COG: NOG06168 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.416
EDS06159.1
Putative transposase; COG: NOG06168 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.416
EDS05911.1
Putative transposase; COG: NOG06168 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.416
EDS05625.1
Putative transposase; COG: NOG06168 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.416
EDS05392.1
Putative transposase; COG: NOG06168 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.414
EDS05954.1
Putative transposase; COG: NOG06168 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.413
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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