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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS07185.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (43 aa)    
Predicted Functional Partners:
rbn_2
Metallo-beta-lactamase domain protein; KEGG: sph:MGAS10270_Spy0181 1.5e-34 metal-dependent hydrolase; COG: COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; Psort location: Cytoplasmic, score: 8.87.
       0.686
HexR_1
SIS domain protein; KEGG: bma:BMA2132 7.3e-07 glucokinase/transcriptional regulator, RpiR family, fusion K00845; COG: COG1737 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.686
yjjG
Haloacid dehalogenase-like hydrolase; KEGG: sto:ST2145 2.3e-15 2-haloalkanoic acid dehalogenase K01560; COG: COG1011 Predicted hydrolase (HAD superfamily); Psort location: Cytoplasmic, score: 8.87.
       0.686
gsiD
KEGG: rha:RHA1_ro08170 0.00013 ABC transporter, permease component; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.575
DppB_4
KEGG: rha:RHA1_ro09047 1.7e-58 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.575
appA_4
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 1.7e-35 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Cellwall, score: 9.18.
       0.575
cpdA_2
Putative phosphoesterase; COG: COG1409 Predicted phosphohydrolases; Psort location: Cytoplasmic, score: 8.87.
       0.546
OppF_4
KEGG: reh:H16_B0716 5.5e-76 dppF3; ABC-type transporter, ATPase component: PepT family; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.546
oppD_4
KEGG: reh:H16_A1303 4.9e-68 ABC-type transporter, ATPase component: PepT family; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.546
fucA_4
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bce:BC0380 2.5e-55 L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
       0.400
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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