Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nhaC-3Na+/H+ antiporter family protein; KEGG: gme:Gmet_3239 0.0019 hppA; membrane-bound proton-translocating pyrophosphatase K01507; COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 10.00. (441 aa)    
Predicted Functional Partners:
mtnK
S-methyl-5-thioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.
     
 0.700
MtnA
eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: fnu:FN1413 9.4e-120 methylthioribose-1-phosphate isomerase K08963; COG: COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family; Psort location: Cytoplasmic, score: 8.87; Belongs to the eIF-2B alpha/beta/delta subunits family.
 
   
 0.610
EDS07189.1
Hypothetical protein.
       0.474
nhaC-2
COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.416
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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