Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nhaC-2COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 10.00. (467 aa)    
Predicted Functional Partners:
EDS06960.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
fabG_2
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; KEGG: bha:BH2491 2.9e-47 fabG; 3-oxoacyl-(acyl-carrier protein) reductase K00059; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
       0.773
nhaC
COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 10.00.
 
    
0.741
mleN_5
Na+/H+ antiporter family protein; KEGG: bcz:BCZK0244 0.00025 guanine-hypoxanthine permease; xanthine/uracil permease family protein K06901; COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.695
nhaC-3
Na+/H+ antiporter family protein; KEGG: gme:Gmet_3239 0.0019 hppA; membrane-bound proton-translocating pyrophosphatase K01507; COG: COG1757 Na+/H+ antiporter; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.416
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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