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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LolD_2ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.9e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82. (235 aa)    
Predicted Functional Partners:
macB_1
Efflux ABC transporter, permease protein; KEGG: bur:Bcep18194_B0724 9.8e-06 hypothetical protein K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
   0.963
macB_2
KEGG: pen:PSEEN3042 2.5e-41 macB; macrolide ABC efflux protein MacB; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
   0.922
EDS05115.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.904
EDS07002.1
Hypothetical protein; KEGG: cch:Cag_0337 0.0018 ATPase K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.75.
 
 
 0.897
EDS06965.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.75.
 
 
 0.897
EDS07004.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.847
natA_2
KEGG: reh:H16_A2602 5.6e-35 ABC-type transporter, ATPase component: LOSE family; COG: COG4555 ABC-type Na+ transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.801
EDS06972.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
   0.742
kdpD_4
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01918 1.0e-115 resE; sensor protein ResE; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.36.
 
     0.735
yxlF_8
Lantibiotic protection ABC transporter, ATP-binding subunit; KEGG: fal:FRAAL1877 3.1e-41 putative ABC transporter ATP-binding protein; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.724
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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