Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
macB_1Efflux ABC transporter, permease protein; KEGG: bur:Bcep18194_B0724 9.8e-06 hypothetical protein K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00. (858 aa)    
Predicted Functional Partners:
LolD_2
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.9e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
   0.959
kdpD_4
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01918 1.0e-115 resE; sensor protein ResE; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.36.
 
     0.780
lolD_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.8e-52 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
   0.757
baeS
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01918 1.4e-38 resE; sensor protein ResE; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
   0.750
mtrA_2
Response regulator receiver domain protein; KEGG: ava:Ava_1878 6.1e-38 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
  
     0.744
bceA_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 1.6e-46 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.712
EDS06966.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.5e-49 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
   0.674
EDS05314.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 6.2e-52 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.630
EDS06971.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.601
EDS06972.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.601
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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