Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
arsRKEGG: rru:Rru_A1450 5.9e-10 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (115 aa)    
Predicted Functional Partners:
EDS06974.1
COG: COG0701 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.877
EDS07337.1
Hypothetical protein; COG: NOG31153 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.804
EDS06972.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.629
EDS06971.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.628
EDS06112.1
Putative redox-active disulfide protein 2; COG: COG0526 Thiol-disulfide isomerase and thioredoxins.
 
   
 0.512
macB_1
Efflux ABC transporter, permease protein; KEGG: bur:Bcep18194_B0724 9.8e-06 hypothetical protein K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.497
LolD_2
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.9e-50 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
       0.495
copA
Copper-exporting ATPase; KEGG: efa:EF0298 2.0e-194 copper-translocating P-type ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.470
EDS06113.1
Hypothetical protein; COG: COG0701 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.459
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.445
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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