Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS06985.1Hypothetical protein; KEGG: bfs:BF1664 4.3e-06 putative mannose-6-phosphate isomerase K01809; COG: NOG26319 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (433 aa)    
Predicted Functional Partners:
FruA
KEGG: cpr:CPR_0550 3.4e-163 fructose specific permease K00890; COG: COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.827
thpA
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
    0.622
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tma:TM1359 1.6e-21 sensor histidine kinase K02486; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.621
lyx_1
Carbohydrate kinase, FGGY family protein; KEGG: yps:YPTB0797 3.4e-92 sgbK, lyx, lyxK, xylK; putative L-xylulose kinase K00880; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family.
 
  
 0.604
EDS08810.1
AP endonuclease, family 2; KEGG: ret:RHE_PF00383 1.7e-24 putative epimerase protein K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87.
  
     0.582
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
 
 0.582
tpiA-2
Triose-phosphate isomerase; KEGG: pmu:PM1640 4.8e-77 tpiA_2; triosephosphate isomerase K01803; COG: COG1264 Phosphotransferase system IIB components; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.582
fucU
RbsD/FucU transport family protein; COG: COG4154 Fucose dissimilation pathway protein FucU; Psort location: Cytoplasmic, score: 8.87; Belongs to the RbsD / FucU family.
       0.547
XerC_5
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.525
mglA_1
ABC transporter, ATP-binding protein; KEGG: bha:BH2322 1.8e-125 putative simple sugar transport system ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.519
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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