Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
lyx_1Carbohydrate kinase, FGGY family protein; KEGG: yps:YPTB0797 3.4e-92 sgbK, lyx, lyxK, xylK; putative L-xylulose kinase K00880; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family. (504 aa)    
Predicted Functional Partners:
ulaE_1
KEGG: ecs:ECs5173 1.1e-47 putative hexulose-6-phosphate isomerase K03079; COG: COG3623 Putative L-xylulose-5-phosphate 3-epimerase; Psort location: Cytoplasmic, score: 8.87.
 
  
  0.978
ulaE_2
KEGG: ecs:ECs5173 2.3e-54 putative hexulose-6-phosphate isomerase K03079; COG: COG3623 Putative L-xylulose-5-phosphate 3-epimerase; Psort location: Cytoplasmic, score: 8.87.
 
  
  0.927
rhaB
Rhamnulokinase; KEGG: oih:OB0495 6.0e-118 rhamnulokinase K00848; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
  
  
 
0.904
lyx_3
Carbohydrate kinase, FGGY family protein; KEGG: sme:SMb20497 9.5e-88 lyx; putative L-xylulose kinase protein K00880; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87; Belongs to the FGGY kinase family.
  
  
 
0.903
rhaB-2
Rhamnulokinase; KEGG: bha:BH1551 5.4e-133 rhamnulokinase K00848; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
     
 
0.900
ulaF
KEGG: san:gbs1851 4.0e-80 similar to L-ribulose-5-phosphate 4-epimerase K01786; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.716
gfo
Oxidoreductase, NAD-binding domain protein; KEGG: hsa:27294 1.2e-41 DHDH; dihydrodiol dehydrogenase (dimeric) K00212; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
    0.687
yoaC
KEGG: bca:BCE_3017 3.3e-22 sugar kinase, FGGY family, putative K00851; COG: COG1070 Sugar (pentulose and hexulose) kinases.
  
     0.673
EDS06985.1
Hypothetical protein; KEGG: bfs:BF1664 4.3e-06 putative mannose-6-phosphate isomerase K01809; COG: NOG26319 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.604
fucU
RbsD/FucU transport family protein; COG: COG4154 Fucose dissimilation pathway protein FucU; Psort location: Cytoplasmic, score: 8.87; Belongs to the RbsD / FucU family.
  
    0.491
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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