Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06990.1Hypothetical protein; KEGG: pca:Pcar_2321 7.2e-08 deoxyribose-phosphate aldolase K01619; COG: COG0274 Deoxyribose-phosphate aldolase; Psort location: Cytoplasmic, score: 8.87. (52 aa)    
Predicted Functional Partners:
EDS05920.1
Pyridoxamine 5'-phosphate oxidase family protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.619
EDS07006.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 5.7e-08 beta-N-acetylhexosaminidase K01207; COG: NOG36584 non supervised orthologous group.
  
     0.524
EDS07008.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 2.3e-10 beta-N-acetylhexosaminidase K01207; COG: NOG23360 non supervised orthologous group.
  
    0.524
EDS06991.1
Hypothetical protein.
       0.473
AdhE
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2540 0. aldehyde-alcohol dehydrogenase [includes: alcohol K00001:K04072; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.453
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
  
  
 0.423
betB
Aldehyde dehydrogenase (NAD) family protein; KEGG: tde:TDE0080 1.3e-175 gbsA; betaine aldehyde dehydrogenase K00130; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.404
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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