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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06922.1Hypothetical protein; COG: NOG16916 non supervised orthologous group. (179 aa)    
Predicted Functional Partners:
parB
ParB-like protein; KEGG: pub:SAR11_0354 4.2e-46 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
  
 
 0.858
EDS06920.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.811
soj
Sporulation initiation inhibitor protein Soj; KEGG: cch:Cag_1803 1.6e-69 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.767
serS
serine--tRNA ligase; KEGG: mhu:Mhun_2507 1.8e-86 seryl-tRNA synthetase K01875; COG: COG0172 Seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 10.00.
  
    0.739
mreD
Rod shape-determining protein MreD; COG: NOG16883 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.686
EDS06654.1
KEGG: cyb:CYB_1515 0.0081 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat.
  
   
 0.608
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.578
EDS07102.1
Hypothetical protein; COG: NOG17868 non supervised orthologous group.
 
 
   0.571
mecB
COG: COG4862 Negative regulator of genetic competence, sporulation and motility; Psort location: Cytoplasmic, score: 8.87.
  
     0.562
YdhD
SH3 domain protein; KEGG: ctc:CTC01180 6.5e-21 spore peptidoglycan hydrolase (N-acetylglucosaminidase) K06306; COG: COG3858 Predicted glycosyl hydrolase.
 
   
 0.553
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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