Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ypdA_1HAMP domain protein; KEGG: bld:BLi01366 3.7e-70 yesM; similar to two-component sensor histidine kinase [YesN]; RBL02409 K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (594 aa)    
Predicted Functional Partners:
EDS06861.1
Response regulator receiver domain protein; KEGG: ava:Ava_2028 4.8e-15 two component transcriptional regulator, LuxR family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.979
EDS07991.1
Response regulator receiver domain protein; KEGG: ava:Ava_2028 1.3e-15 two component transcriptional regulator, LuxR family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.830
EDS06803.1
Response regulator receiver domain protein; KEGG: bur:Bcep18194_C7173 5.9e-14 two component transcriptional regulator, AraC family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.829
EDS07830.1
Transcriptional regulator, AraC family; KEGG: bcz:BCZK0490 1.1e-13 response regulator K02475; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.826
btr_3
Response regulator receiver domain protein; KEGG: bcz:BCZK3497 3.3e-17 adaA; transcriptional regulator, AraC family K00567; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.806
ypdB
Response regulator receiver domain protein; KEGG: rru:Rru_A0376 3.8e-09 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.765
lytR_2
Response regulator receiver domain protein; KEGG: abo:ABO_2519 1.8e-08 response regulator; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.762
EDS05737.1
Response regulator receiver domain protein; KEGG: bur:Bcep18194_C7173 7.9e-17 two component transcriptional regulator, AraC family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.760
NatR_2
LytTr DNA-binding domain protein; KEGG: mth:MTH901 1.3e-06 sensory transduction regulatory protein K02485; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.747
lytR_1
LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 0.00013 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.729
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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