Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsA_3KEGG: atc:AGR_L_85 8.1e-114 ABC transporter ATP binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (488 aa)    
Predicted Functional Partners:
rbsC_5
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.7e-38 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.969
rbsC_6
KEGG: aha:AHA_1905 4.0e-34 L-arabinose ABC transporter, permease protein; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.966
lsrB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.888
rbsC_1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 5.9e-63 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.886
rbsC
KEGG: msm:MSMEG_4171 1.6e-55 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.876
rbsC_3
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 2.9e-61 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.874
rbsC_7
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 6.8e-46 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.869
rbsC_4
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.4e-51 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.868
thpA
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.838
RbsB_2
Hypothetical protein; KEGG: msm:MSMEG_6020 0.0014 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.802
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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