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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsC_5Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.7e-38 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (329 aa)    
Predicted Functional Partners:
rbsA_3
KEGG: atc:AGR_L_85 8.1e-114 ABC transporter ATP binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.968
lsrB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.936
mglA_1
ABC transporter, ATP-binding protein; KEGG: bha:BH2322 1.8e-125 putative simple sugar transport system ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.861
MglA_2
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.9e-121 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.861
rbsA_2
KEGG: mlo:mll7012 3.0e-123 ribose ABC transporter, ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.856
MglA_3
ABC transporter, ATP-binding protein; KEGG: ctc:CTC00861 2.7e-161 mglA; galactoside transport ATP-binding protein mglA K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.856
thpA
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.3e-33 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.855
RbsB_2
Hypothetical protein; KEGG: msm:MSMEG_6020 0.0014 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.853
alsB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.851
xylG
KEGG: yps:YPTB1326 9.2e-90 ABC sugar transporter, fused ATP-binding subunits K02056; COG: KOG0058 Peptide exporter, ABC superfamily; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.851
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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