Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
yabPSporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (96 aa)    
Predicted Functional Partners:
EDS06888.1
Spore cortex protein YabQ (Spore_YabQ); Psort location: CytoplasmicMembrane, score: 9.26.
 
  
 0.977
spoIIE
Putative stage II sporulation protein E; KEGG: tte:TTE2396 2.1e-58 rsbU; serine phosphatase RsbU, regulator of sigma subunit K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.855
EDS08280.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.821
ylbJ
Putative sporulation integral membrane protein YlbJ; COG: COG3314 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.806
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.805
spoIVA
Stage IV sporulation protein A; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.786
GerAA
Hypothetical protein; COG: NOG05963 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.785
EDS06886.1
S4 domain protein; KEGG: cps:CPS_0916 0.00015 RNA pseudouridine synthase family protein K06182; COG: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
  
    0.783
SpoIIIAE
Putative stage III sporulation protein AE; COG: NOG06161 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.779
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.777
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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