Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS06888.1Spore cortex protein YabQ (Spore_YabQ); Psort location: CytoplasmicMembrane, score: 9.26. (110 aa)    
Predicted Functional Partners:
yabP
Sporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.977
EDS06886.1
S4 domain protein; KEGG: cps:CPS_0916 0.00015 RNA pseudouridine synthase family protein K06182; COG: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
  
    0.833
cotS
Spore coat protein, CotS family; COG: NOG09979 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.785
EDS07956.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.752
EDS08153.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
  
     0.751
ftsL_1
COG: COG2919 Septum formation initiator.
 
    0.747
spoIIE
Putative stage II sporulation protein E; KEGG: tte:TTE2396 2.1e-58 rsbU; serine phosphatase RsbU, regulator of sigma subunit K06382; COG: COG2208 Serine phosphatase RsbU, regulator of sigma subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.744
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.738
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.734
EDS06316.1
Hypothetical protein; KEGG: bba:Bd1032 0.0026 mepA; hypothetical protein K07261; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.713
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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