Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmsB4Fe-4S binding domain protein; KEGG: afu:AF1202 8.0e-20 molybdopterin oxidoreductase, iron-sulfur binding subunit K00184; COG: COG0437 Fe-S-cluster-containing hydrogenase components 1; Psort location: Cytoplasmic, score: 9.98. (139 aa)    
Predicted Functional Partners:
EDS06840.1
KEGG: afu:AF1203 1.4e-86 molybdopterin oxidoreductase, molybdopterin binding subunit K00183; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Cytoplasmic, score: 8.87; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.998
mobB
COG: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.935
MoeA_3
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
   
 0.921
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.855
hndD_2
Hydrogenase, Fe-only; KEGG: mta:Moth_1717 6.0e-134 iron hydrogenase, small subunit K00336; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.844
HndD_1
Hydrogenase, Fe-only; KEGG: tte:TTE0894 8.9e-195 nuoG; NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) K00336; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.844
ydhV_2
Aldehyde ferredoxin oxidoreductase, tungsten cofactor-binding domain protein; KEGG: swo:Swol_1703 1.2e-199 aldehyde ferredoxin oxidoreductase K03738; COG: COG2414 Aldehyde:ferredoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.838
ydhV_1
Aldehyde ferredoxin oxidoreductase, tungsten cofactor-binding domain protein; KEGG: pfu:PF0346 1.4e-102 aldehyde:ferredoxin oxidoreductase (aor) K03738; COG: COG2414 Aldehyde:ferredoxin oxidoreductase.
  
 
 0.817
EDS06841.1
Hypothetical protein; COG: NOG23393 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.776
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.737
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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