Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lacE_2ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 5.8e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component. (434 aa)    
Predicted Functional Partners:
ugpA_4
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.953
araQ_4
COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.945
EDS06841.1
Hypothetical protein; COG: NOG23393 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.781
araQ_1
COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.745
ugpA_1
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.741
msmF
Transmembrane permease MsmF; KEGG: hpa:HPAG1_0451 1.3e-05 molybdenum ABC transporter ModB K06022; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.726
araQ_2
COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.722
EDS06840.1
KEGG: afu:AF1203 1.4e-86 molybdopterin oxidoreductase, molybdopterin binding subunit K00183; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Cytoplasmic, score: 8.87; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.715
lacG
KEGG: cyb:CYB_0398 0.0063 modB; molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.698
LacF_3
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.696
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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