close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
blaITranscriptional regulator, BlaI/MecI/CopY family; KEGG: bcz:BCZK0993 2.2e-24 blaI; beta-lactamase (penicillinase) repressor K01467; COG: COG3682 Predicted transcriptional regulator. (127 aa)    
Predicted Functional Partners:
blaR
Regulatory protein blaR1; KEGG: bsu:BG11507 5.4e-37 ybxI, ybdS; similar to beta-lactamase K01467; COG: COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.997
copA
Copper-exporting ATPase; KEGG: efa:EF0298 2.0e-194 copper-translocating P-type ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.826
mecR1
Hypothetical protein; KEGG: cph:Cpha266_1596 4.7e-08 beta-lactamase K01467; COG: COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.
 
  
 0.779
copZ
Heavy metal-associated domain protein; KEGG: bpm:BURPS1710b_A1755 1.7e-07 cueA; copper-translocating P-type ATPase K01533; COG: COG2608 Copper chaperone.
  
  
 0.742
EDS06846.1
Hypothetical protein.
  
    0.541
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.