Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
EDS06822.1GBS Bsp-like repeat protein; COG: NOG18564 non supervised orthologous group. (646 aa)    
Predicted Functional Partners:
EDS08620.1
Hypothetical protein.
 
     0.748
EDS08687.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.739
EDS07882.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group.
  
     0.675
EDS06510.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.660
EDS06186.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.638
rep
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1179 1.3e-76 DNA helicase II K01529; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
  
     0.592
EDS08613.1
Hypothetical protein; COG: NOG39007 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.590
EDS08638.1
Hypothetical protein.
 
 
 0.576
EDS07763.1
Hypothetical protein; COG: NOG27907 non supervised orthologous group.
  
 
   0.574
recF_1
Hypothetical protein; COG: COG3593 Predicted ATP-dependent endonuclease of the OLD family; Psort location: Cytoplasmic, score: 8.87.
  
     0.525
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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