Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06739.1Hypothetical protein; COG: COG1512 Beta-propeller domains of methanol dehydrogenase type. (308 aa)    
Predicted Functional Partners:
EDS06738.1
Hypothetical protein; COG: NOG06495 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.984
EDS06740.1
Hypothetical protein; COG: COG4260 Putative virion core protein (lumpy skin disease virus).
 
  
 0.980
lhgO
FAD dependent oxidoreductase; KEGG: ctc:CTC02436 1.9e-128 glycerol-3-phosphate dehydrogenase K00111; COG: COG0579 Predicted dehydrogenase; Psort location: Cytoplasmic, score: 8.87.
    
   0.686
EDS06181.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.607
EDS06741.1
Putative cyclase; COG: COG1878 Predicted metal-dependent hydrolase; Psort location: Cytoplasmic, score: 8.87.
       0.532
EDS06306.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.514
EDS07503.1
Tetratricopeptide repeat protein.
  
     0.512
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tma:TM1359 1.6e-21 sensor histidine kinase K02486; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.479
EDS05708.1
CRISPR-associated RAMP protein; COG: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); Psort location: Cytoplasmic, score: 8.87.
  
     0.472
EDS08541.1
COG: COG4712 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.448
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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