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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06741.1Putative cyclase; COG: COG1878 Predicted metal-dependent hydrolase; Psort location: Cytoplasmic, score: 8.87. (249 aa)    
Predicted Functional Partners:
btr_1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 3.8e-14 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
  
    0.687
EDS06740.1
Hypothetical protein; COG: COG4260 Putative virion core protein (lumpy skin disease virus).
       0.566
EDS06739.1
Hypothetical protein; COG: COG1512 Beta-propeller domains of methanol dehydrogenase type.
       0.532
EDS06738.1
Hypothetical protein; COG: NOG06495 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.495
EDS07841.1
Hypothetical protein; COG: COG5618 Predicted periplasmic lipoprotein.
  
     0.431
EDS06742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.417
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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