Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDS06753.1Nucleotidyltransferase domain protein; COG: COG1708 Predicted nucleotidyltransferases. (102 aa)    
Predicted Functional Partners:
EDS07763.1
Hypothetical protein; COG: NOG27907 non supervised orthologous group.
  
     0.601
EDS06752.1
Hypothetical protein.
       0.551
EDS06754.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group.
  
     0.550
EDS06457.1
Bacteriophage Gp15 protein; COG: NOG24969 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.536
EDS06755.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.435
EDS06745.1
COG: COG3309 Uncharacterized virulence-associated protein D; Psort location: Cytoplasmic, score: 8.87.
   
    0.434
XerD_7
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.422
ybbH_3
SIS domain protein; KEGG: cac:CAC0397 6.0e-08 predicted sugar phosphate aminotransferase involved in capsule formation K08094; COG: COG1737 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.418
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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