Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06755.1Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
XerD_7
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
    
0.840
EDS06754.1
Hypothetical protein; COG: NOG08812 non supervised orthologous group.
 
     0.736
EDS06841.1
Hypothetical protein; COG: NOG23393 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.574
EDS06757.1
Hypothetical protein; COG: COG4804 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.476
EDS07020.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.462
lacE_2
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 5.8e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.454
EDS06753.1
Nucleotidyltransferase domain protein; COG: COG1708 Predicted nucleotidyltransferases.
  
     0.435
lanM
Type 2 lantibiotic biosynthesis protein LanM; COG: COG4403 Lantibiotic modifying enzyme; Psort location: Cytoplasmic, score: 8.87.
  
     0.434
EDS05882.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.426
EDS05668.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tte:TTE0562 1.2e-14 baeS2; sensory transduction histidine kinases K07706; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.424
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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