Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
recD2_3Hypothetical protein; KEGG: chu:CHU_1556 3.3e-09 DNA helicase K01529; COG: COG1112 Superfamily I DNA and RNA helicases and helicase subunits. (1007 aa)    
Predicted Functional Partners:
mcrB
ATPase family associated with various cellular activities (AAA); KEGG: neu:NE2528 4.8e-77 AAA ATPase superfamily K07452; COG: COG1401 GTPase subunit of restriction endonuclease; Psort location: Cytoplasmic, score: 8.87.
  
    0.891
FbpA
COG: COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; Psort location: Cytoplasmic, score: 8.87.
  
    0.786
EDS06758.1
Hypothetical protein.
       0.773
EDS06757.1
Hypothetical protein; COG: COG4804 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.581
nnr
YjeF domain protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
  
    0.463
EDS06760.1
Hypothetical protein; COG: COG1106 Predicted ATPases; Psort location: Cytoplasmic, score: 8.87.
       0.446
radD
KEGG: noc:Noc_3028 1.8e-253 type I restriction enzyme, R subunit K01153; COG: COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; Psort location: Cytoplasmic, score: 8.87.
  
    0.433
EDS06761.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
       0.427
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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