close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06760.1Hypothetical protein; COG: COG1106 Predicted ATPases; Psort location: Cytoplasmic, score: 8.87. (461 aa)    
Predicted Functional Partners:
EDS06761.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
 
     0.958
EDS07006.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 5.7e-08 beta-N-acetylhexosaminidase K01207; COG: NOG36584 non supervised orthologous group.
  
     0.720
EDS07008.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 2.3e-10 beta-N-acetylhexosaminidase K01207; COG: NOG23360 non supervised orthologous group.
  
     0.657
EDS05348.1
Hypothetical protein; COG: NOG21910 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.533
AraN_2
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 1.7e-05 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.528
EDS05181.1
Acetyltransferase, GNAT family; KEGG: mma:MM0180 1.7e-40 diamine acetyltransferase K00657; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Psort location: Cytoplasmic, score: 8.87.
   
    0.513
EDS05333.1
Acetyltransferase, GNAT family; KEGG: sto:ST2077 0.0060 N-terminal acetyltransferase complex ard1 subunit K03789; COG: NOG30432 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
    0.513
EDS07257.1
Hypothetical protein; COG: NOG32083 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.499
recD2_3
Hypothetical protein; KEGG: chu:CHU_1556 3.3e-09 DNA helicase K01529; COG: COG1112 Superfamily I DNA and RNA helicases and helicase subunits.
       0.448
EDS06380.1
DNA primase small subunit; KEGG: ddi:DDB0214830 0.00013 repB; transcription factor IIH subunit K01529; COG: COG4951 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
     0.431
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.