Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06530.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75. (171 aa)    
Predicted Functional Partners:
yeaZ
Universal bacterial protein YeaZ; KEGG: ctc:CTC02444 6.5e-41 O-sialoglycoprotein endopeptidase K01409; COG: COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; Psort location: Cytoplasmic, score: 8.87.
       0.797
tsaE
Hydrolase, P-loop family; KEGG: cjk:jk1734 6.8e-13 alr; hypothetical protein K01775; COG: COG0802 Predicted ATPase or kinase; Psort location: Cytoplasmic, score: 8.87.
       0.792
rimI
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.768
ltaE
Beta-eliminating lyase; KEGG: cac:CAC3420 6.2e-116 low specificity L-threonine aldolase K01620; COG: COG2008 Threonine aldolase; Psort location: Cytoplasmic, score: 8.87.
       0.748
EDS08743.1
Hypothetical protein; KEGG: efa:EF3127 0.0074 gmk-2; guanylate kinase K00942.
  
     0.705
divIB
Hypothetical protein; COG: COG1589 Cell division septal protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.695
EDS07655.1
Hypothetical protein; KEGG: tte:TTE2564 2.6e-11 surA2; parvulin-like peptidyl-prolyl isomerase K07533; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.651
EDS08355.1
Acetyltransferase, GNAT family; KEGG: fnu:FN1295 1.1e-12 acetyltransferase K00680; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Psort location: Cytoplasmic, score: 8.87.
  
     0.605
EDS04950.1
Hypothetical protein; COG: COG4932 Predicted outer membrane protein.
  
     0.600
EDS08153.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
  
     0.594
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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