STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrR_1Transcriptional regulator, TetR family; KEGG: bha:BH3415 0.0026 NADH dehydrogenase K03885; COG: NOG38850 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (200 aa)    
Predicted Functional Partners:
EDS08473.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.694
EDS07980.1
Hypothetical protein; KEGG: ddi:DDB0167703 1.5e-05 hypothetical protein K01971; COG: KOG1181 FOG: Low-complexity; Psort location: Cytoplasmic, score: 8.87.
  
     0.679
EDS06540.1
KEGG: cpf:CPF_2131 6.9e-14 glycerophosphoryl diester phosphodiesterase family protein K01126; COG: COG0584 Glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score: 8.87.
 
     0.673
ytlR
Lipid kinase, YegS/Rv2252/BmrU family; KEGG: eci:UTI89_C2362 8.2e-09 hypothetical protein; COG: COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; Psort location: Cytoplasmic, score: 8.87.
       0.672
yvdT_1
Transcriptional regulator, TetR family; KEGG: bha:BH3415 9.5e-09 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator.
  
     0.672
EDS08291.1
Tetratricopeptide repeat protein; KEGG: mth:MTH977 0.00053 endo-1,4-beta-glucanase related protein K01179; COG: COG3291 FOG: PKD repeat; Psort location: Cytoplasmic, score: 8.87.
  
    0.655
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.655
EDS06316.1
Hypothetical protein; KEGG: bba:Bd1032 0.0026 mepA; hypothetical protein K07261; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.647
EDS08607.1
Cohesin domain protein; KEGG: bce:BC5339 8.8e-07 DNA-directed RNA polymerase delta chain K03048; COG: COG5129 Nuclear protein with HMG-like acidic region.
  
     0.616
EDS04944.1
Hypothetical protein; KEGG: rle:RL2226 0.0022 cdsA; putative phosphatidate cytidylyltransferase K00981; COG: NOG07239 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.605
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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