Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsCKEGG: msm:MSMEG_4171 1.6e-55 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (315 aa)    
Predicted Functional Partners:
rbsA_1
ABC transporter, ATP-binding protein; KEGG: tfu:Tfu_1921 2.3e-54 ABC-type sugar transport system ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 0.992
alsB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.0e-20 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 0.989
MglA_2
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.9e-121 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 0.974
rbsB_3
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 6.5e-25 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 0.970
yphF
Hypothetical protein; KEGG: msm:MSMEG_6020 6.8e-08 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.965
EDS05808.1
Hypothetical protein; KEGG: sth:STH773 0.0082 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.916
rbsC_3
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 2.9e-61 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 
0.915
rbsK_1
Kinase, PfkB family; KEGG: cpf:CPF_1884 2.3e-22 rbsK; ribokinase K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.895
mglA_1
ABC transporter, ATP-binding protein; KEGG: bha:BH2322 1.8e-125 putative simple sugar transport system ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.882
MglA_3
ABC transporter, ATP-binding protein; KEGG: ctc:CTC00861 2.7e-161 mglA; galactoside transport ATP-binding protein mglA K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.877
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.