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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppPUndecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (275 aa)    
Predicted Functional Partners:
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
    
 0.923
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
 0.922
DgkA
KEGG: bca:BCE_4382 3.1e-25 dgkA; diacylglycerol kinase K00901; COG: COG0818 Diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 9.26.
    
 0.917
EDS06571.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.748
ycsE
Cof-like hydrolase; KEGG: btl:BALH_4896 1.9e-27 hydrolase, haloacid dehalogenase-like family K01564; COG: COG0561 Predicted hydrolases of the HAD superfamily; Psort location: Cytoplasmic, score: 8.87.
       0.745
sleB_1
Cell Wall Hydrolase; KEGG: oih:OB0662 2.2e-09 sporulation specific N-acetylmuramoyl-L-alanine amidase K01449; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Extracellular, score: 9.73.
     
 0.549
artQ
ABC transporter, permease protein; KEGG: bja:blr4464 8.6e-25 probable ABC transporter ATP-binding/permease protein K02028:K02029; COG: COG0765 ABC-type amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.540
artP
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 5.4e-30 fliY; cystine-binding periplasmic protein precursor K02030:K02424; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.510
glnQ_1
ABC transporter, ATP-binding protein; KEGG: cpe:CPE0602 2.9e-86 probable amino acid ABC transporter K02028; COG: COG1126 ABC-type polar amino acid transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.477
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
  
 0.455
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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