STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06618.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (81 aa)    
Predicted Functional Partners:
prdB
D-proline reductase, PrdB subunit; KEGG: chy:CHY_2393 1.2e-09 grdB; glycine reductase, selenoprotein B; COG: NOG06475 non supervised orthologous group.
     0.993
EDS06620.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.941
prdA-2
D-proline reductase, PrdA proprotein; KEGG: sth:STH2870 1.9e-12 grdE; glycine reductase proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.929
prdA_3
Hypothetical protein; KEGG: tte:TTE1879 1.9e-05 GrdE proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.893
prdA_2
Hypothetical protein; KEGG: chy:CHY_2391 2.1e-06 grdE; glycine reductase proprotein GrdE.
 
     0.892
rnfC-2
Respiratory-chain NADH dehydrogenase 51 Kd subunit; KEGG: eci:UTI89_C1819 1.8e-18 rnfC; electron transport complex protein RnfC K03615; COG: COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; Psort location: Cytoplasmic, score: 8.87.
 
     0.858
prdA_5
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.800
prdA
D-proline reductase, PrdA proprotein; Psort location: Cytoplasmic, score: 8.87.
 
     0.799
prdA_6
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.799
EDS06614.1
Hypothetical protein; COG: NOG11520 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.795
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.