Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS06623.1KEGG: bce:BC2835 1.2e-66 proline racemase K01777; COG: COG3938 Proline racemase; Psort location: Cytoplasmic, score: 8.87. (353 aa)    
Predicted Functional Partners:
prdB
D-proline reductase, PrdB subunit; KEGG: chy:CHY_2393 1.2e-09 grdB; glycine reductase, selenoprotein B; COG: NOG06475 non supervised orthologous group.
 
  
 0.980
prdA-2
D-proline reductase, PrdA proprotein; KEGG: sth:STH2870 1.9e-12 grdE; glycine reductase proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.977
pepIP_1
Proline-specific peptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
  
  
  0.914
pepIP_2
Hypothetical protein; KEGG: ldb:Ldb1896 5.6e-19 pepIP; proline iminopeptidase K01259; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
  0.914
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.912
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.912
EDS07726.1
KEGG: mbu:Mbur_1274 4.0e-25 alanine dehydrogenase K01750; COG: COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog; Psort location: Cytoplasmic, score: 8.87.
   
 0.880
cutC_1
Putative formate C-acetyltransferase; KEGG: gsu:GSU2101 4.5e-239 formate acetyltransferase K00656; COG: COG1882 Pyruvate-formate lyase; Psort location: Cytoplasmic, score: 9.98.
  
  
  0.833
prdA
D-proline reductase, PrdA proprotein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.782
prdA_5
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.762
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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