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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06625.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
EDS06626.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
     0.891
sufS_1
Cysteine desulfurase family protein; KEGG: mta:Moth_2214 4.7e-86 cysteine desulphurase related, unknown function K01763; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.854
EDS06627.1
Hypothetical protein; KEGG: lma:LmjF28.1160 0.0014 vacuolar type H+ ATPase subunit, putative K02155; COG: COG2391 Predicted transporter component; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.735
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
   
 0.717
EDS08047.1
Hypothetical protein; KEGG: nph:NP1018A 6.8e-07 atpH; H(+)-transporting two-sector ATPase subunit H.a (A-type ATP synthase) K02121; Psort location: Cytoplasmic, score: 8.87.
  
     0.479
selD
KEGG: cpf:CPF_2374 1.6e-92 selD; selenide, water dikinase K01008; COG: COG0709 Selenophosphate synthase.
       0.468
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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