close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06627.1Hypothetical protein; KEGG: lma:LmjF28.1160 0.0014 vacuolar type H+ ATPase subunit, putative K02155; COG: COG2391 Predicted transporter component; Psort location: CytoplasmicMembrane, score: 9.99. (365 aa)    
Predicted Functional Partners:
EDS06626.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.958
sufS_1
Cysteine desulfurase family protein; KEGG: mta:Moth_2214 4.7e-86 cysteine desulphurase related, unknown function K01763; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score: 8.87.
 
     0.768
EDS06625.1
Hypothetical protein.
 
     0.735
selB
KEGG: sfu:Sfum_1220 1.1e-116 selenocysteine-specific translation elongation factor K00955; COG: COG3276 Selenocysteine-specific translation elongation factor; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.735
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
  
 0.727
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.659
cysL_2
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 4.2e-09 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
 
     0.613
selD
KEGG: cpf:CPF_2374 1.6e-92 selD; selenide, water dikinase K01008; COG: COG0709 Selenophosphate synthase.
 
  
 0.594
sufS_2
Cysteine desulfurase family protein; KEGG: tde:TDE2460 1.5e-87 aminotransferase, class V; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score: 8.87.
 
    0.529
fldC_2
2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.
 
    0.406
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.