STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysL_2LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 4.2e-09 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
selB
KEGG: sfu:Sfum_1220 1.1e-116 selenocysteine-specific translation elongation factor K00955; COG: COG3276 Selenocysteine-specific translation elongation factor; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.877
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.842
selD
KEGG: cpf:CPF_2374 1.6e-92 selD; selenide, water dikinase K01008; COG: COG0709 Selenophosphate synthase.
 
     0.678
EDS06627.1
Hypothetical protein; KEGG: lma:LmjF28.1160 0.0014 vacuolar type H+ ATPase subunit, putative K02155; COG: COG2391 Predicted transporter component; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.613
sufS_1
Cysteine desulfurase family protein; KEGG: mta:Moth_2214 4.7e-86 cysteine desulphurase related, unknown function K01763; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score: 8.87.
       0.491
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
   
 0.465
EDS06626.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.439
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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