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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06639.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (89 aa)    
Predicted Functional Partners:
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.772
EDS06302.1
Hypothetical protein.
  
     0.764
EDS08713.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.763
EDS07942.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.762
EDS08742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.759
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.756
EDS08196.1
Hypothetical protein.
  
     0.752
EDS05745.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.750
EDS06859.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.742
EDS06910.1
Hypothetical protein; KEGG: oih:OB2490 0.00066 carboxy-terminal processing protease K03797.
 
     0.732
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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