STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06654.1KEGG: cyb:CYB_1515 0.0081 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat. (458 aa)    
Predicted Functional Partners:
EDS06655.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.812
EDS08607.1
Cohesin domain protein; KEGG: bce:BC5339 8.8e-07 DNA-directed RNA polymerase delta chain K03048; COG: COG5129 Nuclear protein with HMG-like acidic region.
 
   0.802
EDS06657.1
Arylsulfatase; KEGG: aha:AHA_2572 1.3e-08 sulfatase; COG: COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; Psort location: CytoplasmicMembrane, score: 9.26.
 
    0.802
EDS08472.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.788
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.783
EDS08473.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.780
EDS06439.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.779
MrdA
Penicillin-binding protein, transpeptidase domain protein; KEGG: ppd:Ppro_2545 4.2e-57 peptidoglycan glycosyltransferase K05364; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.775
EDS06910.1
Hypothetical protein; KEGG: oih:OB2490 0.00066 carboxy-terminal processing protease K03797.
  
     0.774
FtsL_2
Hypothetical protein.
  
     0.773
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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