Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_1ABC transporter, ATP-binding protein; KEGG: rru:Rru_A3130 1.3e-42 ABC transporter component K06020; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (295 aa)    
Predicted Functional Partners:
EDS06669.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
   0.951
EDS06667.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.924
sigW_1
Sigma-70 region 2; KEGG: reh:H16_A2563 7.3e-10 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.909
EDS08484.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
   0.614
EDS06664.1
Hypothetical protein.
       0.613
EDS06180.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.97.
 
   0.601
EDS05229.1
Hypothetical protein; KEGG: lsl:LSL_1527 0.0054 O-acetyl transferase K00680; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.477
EDS06665.1
Transporter, auxin efflux carrier (AEC) family protein; KEGG: azo:azo2550 1.3e-35 mdcF3; putative malonate transporter; COG: COG0679 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
       0.462
EDS05168.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.454
ytrA_3
KEGG: bcz:BCZK3833 5.5e-12 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
    0.430
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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