Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS06723.1COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.75. (154 aa)    
Predicted Functional Partners:
EDS06305.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.734
EDS06316.1
Hypothetical protein; KEGG: bba:Bd1032 0.0026 mepA; hypothetical protein K07261; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.724
EDS06438.1
Hypothetical protein.
  
     0.717
EDS06302.1
Hypothetical protein.
  
     0.709
EDS06859.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.708
EDS06910.1
Hypothetical protein; KEGG: oih:OB2490 0.00066 carboxy-terminal processing protease K03797.
  
     0.702
EDS07743.1
Hypothetical protein; KEGG: fnu:FN1041 2.0e-12 acetyltransferase K00680; COG: COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases; Psort location: Cytoplasmic, score: 8.87.
  
     0.700
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.694
EDS07568.1
Hypothetical protein; KEGG: osa:3131434 0.0030 rpoC2; RNA polymerase beta'' chain K03046; COG: NOG12748 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.80.
  
     0.691
EDS06439.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.662
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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