Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
BglYBeta-galactosidase trimerization domain protein; KEGG: bld:BLi00447 1.1e-194 close homolog to LacA beta-galactosidase; RBL00406 K01190; COG: COG1874 Beta-galactosidase; Psort location: Cytoplasmic, score: 8.87. (684 aa)    
Predicted Functional Partners:
ebgA
KEGG: cpe:CPE0771 1.3e-152 bgaL; beta-galactosidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.973
Mro
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.917
Btr_2
KEGG: bcz:BCZK3497 1.4e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.676
lacE
Lactose-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
   
 0.668
galE_2
Hypothetical protein; KEGG: cac:CAC2960 1.8e-55 galE; UDP-galactose 4-epimerase K01784; COG: COG1087 UDP-glucose 4-epimerase.
     
 0.641
metG-2
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.609
lacZ
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: msu:MS0749 2.1e-35 lacZ; beta-galactosidase/beta-glucuronidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.572
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.511
EDS06804.1
Alpha-L-fucosidase; KEGG: cpe:CPE0324 6.4e-137 probable glycosyl hydrolase K01206; COG: COG3669 Alpha-L-fucosidase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.440
LacF_3
COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.429
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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