Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06515.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
EDS06516.1
Hypothetical protein.
      0.832
EDS06517.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives.
 
   0.667
EDS05484.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.632
EDS06497.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives.
 
   0.601
EDS07224.1
Transposase, IS4 family; COG: COG3666 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
  
     0.583
EDS05961.1
Transposase; COG: COG2963 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.583
EDS06128.1
LytTr DNA-binding domain protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.574
rep
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1179 1.3e-76 DNA helicase II K01529; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.569
EDS07883.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.560
recF_1
Hypothetical protein; COG: COG3593 Predicted ATP-dependent endonuclease of the OLD family; Psort location: Cytoplasmic, score: 8.87.
  
     0.548
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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