STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06460.1Hypothetical protein; KEGG: vvy:VV3256 0.0031 ATP synthase F0, C subunit K02110; COG: COG5412 Phage-related protein; Psort location: CytoplasmicMembrane, score: 7.63. (386 aa)    
Predicted Functional Partners:
EDS06461.1
Hypothetical protein.
       0.779
EDS06462.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.779
EDS06463.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.779
EDS06459.1
COG: COG5412 Phage-related protein.
       0.773
EDS08640.1
COG: COG4824 Phage-related holin (Lysis protein); Psort location: CytoplasmicMembrane, score: 9.26.
 
    0.752
EDS06457.1
Bacteriophage Gp15 protein; COG: NOG24969 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.736
EDS08498.1
COG: COG4824 Phage-related holin (Lysis protein); Psort location: Cytoplasmic, score: 8.87.
 
    0.705
EDS08637.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
 
    0.657
EDS08672.1
Hypothetical protein; COG: NOG11538 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.655
EDS07397.1
Phage major tail protein, phi13 family; COG: NOG22717 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.648
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.