STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06471.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
dltC
Hypothetical protein; KEGG: lla:L90005 0.00049 dltC; D-alanyl carrier protein K03367; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.755
TycA
AMP-binding enzyme; KEGG: cje:Cj1307 7.5e-95 putative amino acid activating enzyme K01932; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.683
btrK
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; KEGG: nmu:Nmul_A2669 5.4e-30 Orn/DAP/Arg decarboxylase 2 K01586; COG: COG0019 Diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 8.87.
 
     0.663
EDS08645.1
Phage minor structural protein, N-terminal domain protein; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
  
 
 0.658
PatA_3
MBOAT family protein; KEGG: hne:HNE_2072 1.2e-73 algI; alginate biosynthesis protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the membrane-bound acyltransferase family.
 
    0.531
EDS06483.1
COG: COG4713 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.455
mdoB
Arylsulfatase; KEGG: sec:SC4393 6.9e-35 mdoB; phosphoglycerol transferase I K01002; COG: COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; Psort location: CytoplasmicMembrane, score: 9.99.
       0.416
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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