Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdoBArylsulfatase; KEGG: sec:SC4393 6.9e-35 mdoB; phosphoglycerol transferase I K01002; COG: COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; Psort location: CytoplasmicMembrane, score: 9.99. (610 aa)    
Predicted Functional Partners:
glmU_2
Hypothetical protein; KEGG: cno:NT01CX_1778 1.2e-07 galU; UTP-glucose-1-phosphate uridylyltransferase K00963; COG: NOG09722 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.510
EDS07980.1
Hypothetical protein; KEGG: ddi:DDB0167703 1.5e-05 hypothetical protein K01971; COG: KOG1181 FOG: Low-complexity; Psort location: Cytoplasmic, score: 8.87.
  
     0.438
EDS06471.1
Hypothetical protein.
       0.412
EDS04950.1
Hypothetical protein; COG: COG4932 Predicted outer membrane protein.
  
     0.411
EDS06474.1
KEGG: bha:BH0810 4.5e-24 N-acetylmuramoyl-L-alanine amidase K01448; COG: NOG18564 non supervised orthologous group.
      
0.409
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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