STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06474.1KEGG: bha:BH0810 4.5e-24 N-acetylmuramoyl-L-alanine amidase K01448; COG: NOG18564 non supervised orthologous group. (1166 aa)    
Predicted Functional Partners:
EDS08620.1
Hypothetical protein.
 
     0.717
EDS08687.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.697
glmU_2
Hypothetical protein; KEGG: cno:NT01CX_1778 1.2e-07 galU; UTP-glucose-1-phosphate uridylyltransferase K00963; COG: NOG09722 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.613
EDS08638.1
Hypothetical protein.
 
 
 0.585
EDS07882.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group.
  
     0.583
EDS06510.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.568
hyaD
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 7.5e-56 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.519
rep
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1179 1.3e-76 DNA helicase II K01529; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
  
     0.506
epsJ_1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 2.1e-47 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.486
TarI
KEGG: bth:BT2881 1.7e-58 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991; COG: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase.
       0.480
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.