Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDS06474.1KEGG: bha:BH0810 4.5e-24 N-acetylmuramoyl-L-alanine amidase K01448; COG: NOG18564 non supervised orthologous group. (1166 aa)    
Predicted Functional Partners:
EDS08620.1
Hypothetical protein.
 
     0.718
EDS08687.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.695
glmU_2
Hypothetical protein; KEGG: cno:NT01CX_1778 1.2e-07 galU; UTP-glucose-1-phosphate uridylyltransferase K00963; COG: NOG09722 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.612
EDS07882.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group.
  
     0.583
EDS08638.1
Hypothetical protein.
 
 
 0.575
EDS06510.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.568
hyaD
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 7.5e-56 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.517
rep
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1179 1.3e-76 DNA helicase II K01529; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
  
     0.506
epsJ_1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 2.1e-47 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.483
cwlC_1
KEGG: bsu:BG10825 1.1e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
 
 
0.481
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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