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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06476.1Transposase-like protein; COG: COG1943 Transposase and inactivated derivatives. (142 aa)    
Predicted Functional Partners:
TarI
KEGG: bth:BT2881 1.7e-58 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991; COG: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase.
       0.492
rffG_2
NAD dependent epimerase/dehydratase family protein; KEGG: pfu:PF1357 4.1e-39 UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase K01710; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
       0.489
EDS06478.1
KEGG: cpf:CPF_0917 3.8e-36 LicD family protein K07271; COG: COG3475 LPS biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
       0.488
epsJ_3
Glycosyltransferase, group 2 family protein; KEGG: bce:BC5429 1.2e-27 beta-1,3-N-acetylglucosaminyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
       0.483
EDS06480.1
Polysaccharide biosynthesis protein; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
       0.435
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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