STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsJ_3Glycosyltransferase, group 2 family protein; KEGG: bce:BC5429 1.2e-27 beta-1,3-N-acetylglucosaminyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87. (348 aa)    
Predicted Functional Partners:
rffG_2
NAD dependent epimerase/dehydratase family protein; KEGG: pfu:PF1357 4.1e-39 UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase K01710; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.866
EDS06478.1
KEGG: cpf:CPF_0917 3.8e-36 LicD family protein K07271; COG: COG3475 LPS biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
     
 0.799
EDS06480.1
Polysaccharide biosynthesis protein; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.711
WcaJ
KEGG: tcx:Tcr_1675 1.8e-70 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.665
galE
KEGG: bsu:BG11837 1.3e-124 galE; UDP-glucose 4-epimerase K01784; COG: COG1087 UDP-glucose 4-epimerase; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.580
tagH
KEGG: cac:CAC2328 4.7e-54 polysaccharide ABC transporter, ATPase component K01990; COG: COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.534
kpsM
ABC-2 type transporter; COG: COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.509
EDS06476.1
Transposase-like protein; COG: COG1943 Transposase and inactivated derivatives.
       0.483
galE_2
Hypothetical protein; KEGG: cac:CAC2960 1.8e-55 galE; UDP-galactose 4-epimerase K01784; COG: COG1087 UDP-glucose 4-epimerase.
 
  
 0.475
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.427
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.