STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06339.1Hypothetical protein; KEGG: pol:Bpro_5394 1.0e-09 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase. (68 aa)    
Predicted Functional Partners:
EDS07406.1
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rba:RB818 3.1e-10 reverse transcriptase/maturase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87.
  
     0.767
ltrA_3
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rba:RB818 3.0e-25 reverse transcriptase/maturase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87.
  
     0.760
ltrA
Group II intron-encoded protein LtrA; KEGG: spi:MGAS10750_Spy1709 2.2e-120 reverse transcriptase / RNA maturase / endonuclease K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87.
  
     0.739
ltrA-2
Group II intron-encoded protein LtrA; KEGG: spi:MGAS10750_Spy1709 2.2e-120 reverse transcriptase / RNA maturase / endonuclease K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87.
  
     0.739
EDS06342.1
Hypothetical protein; COG: COG3344 Retron-type reverse transcriptase.
 
     0.706
ltrA_1
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: spi:MGAS10750_Spy1709 7.8e-148 reverse transcriptase / RNA maturase / endonuclease K00986; COG: COG3344 Retron-type reverse transcriptase.
  
     0.645
EDS06340.1
Transposase; COG: COG2963 Transposase and inactivated derivatives.
     
 0.639
EDS06341.1
Hypothetical protein; COG: COG2801 Transposase and inactivated derivatives.
       0.489
fabG_4
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: rha:RHA1_ro05790 4.8e-45 probable 3-oxoacyl-[acyl-carrier-protein] reductase K00059; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
       0.455
rpiB_2
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: rru:Rru_A1334 9.7e-31 ribose 5-phosphate isomerase B K01819; COG: COG0698 Ribose 5-phosphate isomerase RpiB.
       0.429
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.